...Diagnosis of an Infected Patient: Microbiology Paper BIO 212 Professor Fazely January 18, 2015 Professor Fazely Bio 212 18 January 2015 Diagnosis of an Infected Patient After collecting a sputum sample from a patient that is suspected or may be infected with a bacterium from one of the following genera: Escherichia, Mycoplasma or Bacillus; Each bacteria listed should be isolated by utilizing each of the various staining techniques. The best staining techniques to use is the Gram stain or the Acid- fast stain due to the fact that they both will provide a lot of information in detail regarding the bacteria being studied. It is very important to be observant of how each bacterium obtained reacts to each stain, and how the results obtained will lead us in a developing diagnosis. The first technique being used is the Gram stain. Gram stain is probably one of the most common used staining procedures used in the field of microbiology. It is one of the differential stains that are used to characterize bacteria in one of the two groups: either gram positive or gram negative bacteria. Bacteria prepared for the Gram stain is a heated fixed smear that is covered with a crystal violet. Because the purple stain impart its color to all cells. After a short period of time, the purple dye is then washed off, and the smear is then covered with iodine, a mordant. When the iodine is then washed off, both the gram-positive and gram-negative bacteria appear dark violet in color or...
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...Diagnosis of an Infected Patient: Microbiology Paper Bio 212 18 January 2015 Diagnosis of an Infected Patient After collecting a sputum sample from a patient that is suspected or may be infected with a bacterium from one of the following genera: Escherichia, Mycoplasma or Bacillus; Each bacteria listed should be isolated by utilizing each of the various staining techniques. The best staining techniques to use is the Gram stain or the Acid- fast stain due to the fact that they both will provide a lot of information in detail regarding the bacteria being studied. It is very important to be observant of how each bacterium obtained reacts to each stain, and how the results obtained will lead us in a developing diagnosis. The first technique being used is the Gram stain. Gram stain is probably one of the most common used staining procedures used in the field of microbiology. It is one of the differential stains that are used to characterize bacteria in one of the two groups: either gram positive or gram negative bacteria. Bacteria prepared for the Gram stain is a heated fixed smear that is covered with a crystal violet. Because the purple stain impart its color to all cells. After a short period of time, the purple dye is then washed off, and the smear is then covered with iodine, a mordant. When the iodine is then washed off, both the gram-positive and gram-negative bacteria appear dark violet in color or purple. The next, process is the slide is then washed with alcohol...
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...Discussion a) Gram Staining Escherichia coli is a Gram-negative rod- shaped bacterium. Initially the bacterium is stained purple by the primary stain, crystal violet. The alcohol which is used as a decolourising agent washes away the outer membrane and allows the crystal violet complex to wash out from the thin peptidoglycan, making the cell colourless. When the counterstain, safranin is applied, they appear pink. Staphylococcus aureus is a Gram-positive bacterium and appear in cocci grape-like clusters. They have a very thick peptidoglycan layer that can retain the purple stain from crystal violet. The decolourising solution has no effect on this bacterium besides a slight drying effect on the wall, The pink counterstain does bind the cells but it is not seen because covered by a darker purple colour primary stain. Bacillus subtilis are Gram-positive rod shaped bacteria that appear as small chains or single cells. They have thick peptidoglycan layer that can retain the purple stain from crystal violet. Saccharomyces cerevisiae are circular which occur singly or in a group. They do not respond to gram staining due to their cell wall that consists of glucan and mannoproteins. They usually bind to the original dye, look blue but they are not Gram-positive. Thus, they are Gram non-reactive. Water isolates found in rod shaped and they are Gram-negative bacteria that stains pink after safranin applied due to the thin peptidoglycan layer. b) Acid fast staining Mycobacterium smegmatis...
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...You are given a sputum sample from a patient that may be infected with a bacterium from one of the following genera: Bacillus, Escherichia, or Mycoplasma. In a Microsoft Word document, 1. Describe the important anatomical differences among these three genera (i.e., those unique features that could be used to differentiate among them such as their shape, size, unique things found in each one, etc.). Bacillus is defined as any of a group of rod-shaped, gram-positive, aerobic or (under some conditions) anaerobic bacteria widely found in soil and water and they frequently occur in chains. Escherichia is a genus of Gram-negative, non-spore forming, facultatively anaerobic, rod-shaped bacteria from the family Enterobacteriaceae. In those species which are inhabitants of the gastrointestinal tracts of warm-blooded animals, Escherichia species provide a portion of the microbially derived vitamin K for their host. While many Escherichia are killer commensals, particular strains of some species are human pathogens and are known as the most common cause of urinary tract infections, significant sources of gastrointestinal disease, ranging from simple diarrhea to dysentery as well as a wide range of other pathogenic states. While E. coli is responsible for the vast majority of Escherichia-related pathogenesis, other members of the genus have also been implicated in human disease. Mycoplasma refers to a genus of bacteria that lack a cell wall. Without a cell wall, they are unaffected...
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...Staining Microorganisms Microorganisms are often first observed by coloring the specimen with a dye to emphasize the structures for examination. In order to dye, (or stain ) the specimen, it is fixed, (attached to the microscope slide). ( Tortara, Funke, Case, 2013). To carry through this staining and fixing, the microorganisms are killed and attached to the slide. There are several staining techniques to accomplish this preparation. There are simple stains, differential stains, and special stains. The stain is cationic (basic) or anionic (acidic). Examples of cationic dyes are crystal violet, safranin , methylene blue and basic fuchsin. Examples of anionic dye are, acid fuschin, congo red and nigrosin. Simple stains are, as they are called, “simple”; they are an alcohol solution of a basic dye, and they will highlight the microorganism so the observer can examine the structures , arrangements of cells, and shape of the specimen. If needed, an additive mordant) can be added to the sample to thicken it, making it easier to see. Simple stains are the least expensive method of staining, and can be used with all microorganisms. These are effective because they stain a pure culture and do not have to be washed and re stained. Differential stains are the most widely used staining technique for examining bacteria, as the stains react differently with different cell typed. This method of staining uses the Gram stain and the acid-fast stain. Gram staining is the...
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...Eukaryotic and Prokaryotic Cells Antibiotics are chemical substances that are produced by bacteria and fungi to fight or kill microorganisms. There are two types of microorganisms, and they are the Eukaryotic and Prokaryotic cells. They differ according to the cell wall size, the morphology of the ribosome and how they metabolize. These differences determine how an antibiotic therapy is chosen to treat microorganisms. The cell wall difference is the most important distinction between Prokaryotic and Eukaryotic cells. Some of the distinguishing features of the cells include the following. Prokaryotic cells: * Do not have a predefined nucleus * Smaller (7oS) ribosomes * Chromosomes are dispersed in the cytoplasm * Most metabolically diverse * Small – typically 0.2-2.0 micrometers in diameter * Don’t undergo meiosis but reproduce sexually by the transfer of DNA fragments through conjugation * Contain no membrane-bound organelles * Have circular chromosomes and lack histone proteins Eukaryotic cells * Have linear DNA and contain histone proteins * Reproduce sexually with the use of meiosis * Contain membrane-bound organelles * More complex, evolved organisms * Larger (8oS) ribosomes * Contain true nuclei in which chromosomes are compacted as chromatin * Larger – typically 10-100 micrometers in diameter Different Antibiotics target only certain types of cells, and this is why it is important to know the structure...
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...Diagnosis of an Infected Patient Infection is the invasion and growth of microorganisms such as bacteria, viruses, and parasites that are not normally present within the body. A prokaryotic cell is a simple cell that does not have a nucleus. One of the most common types of prokaryotic cells is a bacterium. Bacteria are differentiated by many factors including shape, chemical composition, nutritional requirements, biochemical activities, and sources of energy (Tortora 76). A patient with an infection in the upper respiratory system will need to have a sputum sample sent to the lab for further evaluation to determine the cause in order to accurately treat the infection. While many microorganisms can be the cause of infection, this essay will focus on the following genera: Bacillus, Escherichia, and Mycoplasma as the cause of the patient’s infection. Bacillus is a rod-shaped, endospore-forming, facultatively anaerobic and gram-positive bacterium (Tortora G2). The gram stain is fundamental to identify the characteristics of bacteria as this process differentiates organisms according to the cell wall structure. Gram-positive cells have a thick cell wall layer and will stain blue to purple. The Gram stain process requires four steps which include applying a primary stain, usually crystal violet, to a heat-fixed smear, then adding a mordant, usually Iodine, followed by rapid decolorization with alcohol or acetone and finally counterstaining with safranin (Hussey). At...
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... | When given a sputum sample it is important to take in consideration the type of bacteria that could be present, causing illness in the patient. There are hundreds of different types of bacteria, but I will only focus on how to detect three of them: Bacillus, Escherichia, and Mycoplasm. I will also discuss how to identify the genera causing the patients infection by describing the different staining procedure protocols. The term bacillus has two different meanings. The lowercase bacillus means bacterial shape while the italicized bacillus refers to a specific genus. Bacillus cells are usually single rods that may look like straws that often form long twisted cells (p. 78). They are typically rods that produce endospores. Bacillus is a gram-positive cell that may at times have gram negative cells. In a gram positive cell, there are many layers of a thick, rigid structure known as peptidoglycan. They also have teichoic acids which are made primarily of alcohol and phosphate. This acid plays a role in cellular growth and prevention of cell wall breakdown. One of the most well known bacteria in microbiology, Escherichia can be characterized as rod shaped having short hair like appendages. Escherichia is a gram negative bacterium. These walls contain lipopolysaccharides, lipoproteins, and phospholipids. The O polysaccharide acts as an antigen that is helpful to distinguish species of gram negative bacteria. There is...
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...Discovering which bacteria are responsible for causing infection in a patient is a very helpful tool and allows for accuracy in providing appropriate antibiotic therapy. A technique utilized is called Gram staining. Gram staining is a type of differential staining method meaning that the stains will react differently depending on the bacteria present. This is a good starting point for identifying specific bacteria. In our scenario, Bacillus, Escherichia, or a Mycoplasma is expected to be found. Bacillus bacteria are rod-shaped and may appear in pairs or chains. They are characteristically Gram positive but may become Gram negative with age. Bacillus bacteria is aerobic in nature meaning that it uses oxygen. A unique feature of Bacillus is its...
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...Bacillus are anatomically rods that produce endospores, and commonly, can be found in soil. A few of its strains are pathogenic to humans, and several used in antibiotics. These several strains are variants of single species; just have different genes carried on the plasmids which can transfer from one bacterium to another. Well known strains are bacillus anthracis and bacillus thuringensis. Bacillus anthracis, or Anthrax, is a disease that affects cattle, sheep, and horses that have adapted/mutated and infect humans. Bacillus thuringensis is a microbial insect pathogen that produce crystalline toxins, and is used to spray on plants to reply and protect from insects. To help identify if this is the causing bacteria, one would use endospore staining, where malachite green is applied to a heat-fixed smear and heated to steaming for 5minutes, and helps penetrates the endospore wall. Then the smear is washed for 30seconds to remove the green from all other cell parts. Next, safranin is applied to the smear to stain the rest of the cell. The smear will be red or pink for cell parts, and malachite green will be the endospores. A gram stain would also will be used to identify the bacterium is bacillus. Bacillus would be a gram-positive, because it retains the violet crystal stain, and appear purple. They are positive because they are easily killed by penicillins and cephalosporins. Escherichia is the next genera and is the most common inhabitants of human intestinal tract. It is also one...
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...Strain-Testing to Determine Genera Class Name University/School Name Cytoplasm is generally transparent, making it difficult to study under a microscope. Various methods of staining microbes are used to differentiate them and draw attention to their distinguishing features. In the case of a patient whose symptoms are consistent with an infection of the Bacillus, Escherichia and Mycoplasma genera, a sputum sample can be analyzed with staining procedures to narrow down possibilities to one genera. All tests begin by applying a sample to a slide and allowing it to dry. Most tests then require that the culture be passed over a flame to kill the cells and allow them to accept dyes. Some tests don’t require heat fixing due to the damage it causes to fine structures. The Bacillus, Escherichia and Mycoplasma genera can be distinguished by their distinct features anatomically as well as their reactions to various solutions. The acid-fast test, spore test, flagella test, and the negative strain technique, taken together, will eliminate two of the possibilities and leave one. Mycoplasma can be distinguished from other genera using the acid-fast test. In this process, sputum is applied to a slide and an initial bright red dye is applied to the sample via heat or through a solvent. The dye is then rinsed off with an acid-alcohol solution; Mycoplasma cells retain the red dye after being washed, while Escherichia and Bacillus cells would take on a blue stain. If Mycoplasma is ruled out, a spore...
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...M2D1: Microscopy and Differential Staining 1. What are the advantages and disadvantages of the different types of light and electron microscopes discussed in Chapter 3 that are used to study microorganisms? Focus your response in terms of the following parameters: o Range of magnification o Resolving ability o Sample preparation o Possible states of sample (e.g. whole organism, part of, living, non-living, etc Compound Light microscopes magnification is 2000X. Resolution of about 0.2μm. Can only see very small specimens and specimens are stained. Darkfield – used to study live microorganisms that cannot be stained or staining distorts the image or they are invisible using the normal light microscope. Phase-Contrast – in living microorganisms, this scope allows you to see detailed internal structures, plus you do not have to fix or stain the microbes. Differential Interference Contrast (DIC) – instead of one beam of light, 2 beams are used. Image looks almost 3-dimensional and is brightly colored. Fluorescence – used mainly as a diagnostic technique. Stained with fluorochromes and viewed with an ultraviolent light. Confocal – makes 3-dimensional images using a computer. Able to see entire cells and their components. Two-Photon – living cells can be seen up to 1mm (1000um) deep in tissues. Can also track, in real time, the activity of cells. Scanning Acoustic – living cells that are attached to cancer cells, artery plaque and biofilms can be seen through...
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...cell walls of cellulose * produce their own food through photosynthesis FUNGI * Eukaryotic organisms with rigid cell wall * Yeasts * Single-celled * Reproduce by budding * Molds * Large, fuzzy, multicelled organisms * Produce spore * Superficial infections * Athlete’s foot * Ringworm * Thrush Can cause systemic infections PROTOZOA * Single-celled eukaryotic organisms, larger than bacteria * Found in soil and water * Illnesses * Malaria * Amebic dysentery * Trichomoniasis vaginitis * Leading cause of death in developing countries * VIRUS * Smallest known infectious agents * Subcellular microorganism * Have only nucleic acid surrounded by a protein coat * Must live and grow in living cells of other organisms * Illnesses caused by viruses * Colds - AIDS * Influenza - Mumps * Croup - Rubella * Hepatitis - Measles * Warts - Herpes * Vaccines are available for many viruses * BACTERIA * Single-celled prokaryotic organisms * Reproduce rapidly * a typical bacterial cell is ~ 1 mm (from 0.4-100 mm) * Found nearly everywhere * Dust, dirt, refuse,...
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...unicellular microorganisms, with variable shapes and nutritional needs. They lack a distinct nucleus and occur singly or in chains or clusters and form distinct colonies. Bacteria are classified on the basis of many characteristics. Morphological and physiological features such as cell shape, motility, formation of spores and other distinguishable structures, and reaction to Gram stain is a good start in identifying bacteria. Other staining techniques such as Acid Fast stain are also useful in determining species. More important in identification of a genus and species of bacteria are biological tests, including the determination of the types of nutrients a cell can use, the products of its metabolism, and the response to specific chemicals. Other factors that can assist in identification of bacteria are their ecological habitats and more advanced methods such as genetic and molecular composition. Using various techniques one is able to distinguish and ultimately assign then genus and species of the unknown bacteria. Methods: Gram Staining: The Gram stain separates bacteria in two distinct classes and is also useful in distinguishing morphology. Through this technique one is able to identify bacteria as either gram positive or gram negative. The gram-negative bacteria have thin peptidoglycan layers that do not hold the primary stain, rather...
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...Microbiology Mid Term Review What contribution did these dudes make to science and what type of experiments were involved in the discoveries they made? Louis Pasteur- Heat pasteurization- 1st vaccine for rabies. Found alcohol only produced in wine if yeast was present. “Swan necked” flasks experiment for spontaneous generation. Robert Koch- Studied anthrax, Koch’s postulates (germ theory) studied and awarded for TB research. Anton van Leewenhoek- Made the 1st lens to observe living microorganisms. The lens magnified up to 300x and were free of distortion. Edward Jenner- Studied small pox. Came up with the first vaccine for smallpox. Alexander Fleming- Discovered lysozyme (an enzyme) was found in tears, saliva, and sweat could kill bacteria. What issues and types of instruments are involved in visualizing bacteria and viruses with a compound light microscope? Reflection- transmission-absorption with florescence-refraction. Condenser-is a lens that serves to concentrate light from the illumination source that is in turn focused through the object and magnified by the objective lens. iris diaphragm-regulates the amount of light on the specimen. objective lenses- magnifies ranges from 10x to 40x, ocular lenses. stage- supports the slide for viewing. focusing knobs-moves the stage up and down for focusing. total magnification- take the power of the objective (4X, 10X, 40x) and multiply by the power of the eyepiece, usually 10X. What are the differences...
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