...Algae and Friends 1. Why are algae important in nature? How are algae, fungi and lichens related and how is this relationship defined? Explain how the presence of algae can indicate either pollution or productivity of a body of water. Algae are a very large and diverse group of eukaryotic organisms, ranging from unicellular genera such as Chlorella and the diatoms to multicellular forms such as the giant kelp. Most are autotrophic and lack many of the distinct cell and tissue types found in land plants such as stomata, xylem and phloem. The largest and most complex marine algae are called seaweeds, while the most complex freshwater forms are the Charophyta, a division of algae that includes Spirogyra and the stoneworts. Algae has several uses in nature and for mankind. Agar is a jelly-like substance, obtained from algae, which is derived from red algae, has a number of commercial uses. It is a good medium on which to grow bacteria and fungi as most microorganisms cannot digest agar. Alginic acid, or alginate, is extracted from brown algae. Its uses range from gelling agents in food, to medical dressings. Alginic acid also has been used in the field of biotechnology as a biocompatible medium for cell encapsulation and cell immobilization. Molecular cuisine is also a user of the substance for its gelling properties, by which it becomes a delivery vehicle for flavors. Algae fuel or algal biofuel is an alternative to fossil fuel that uses algae as its source of natural...
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... Contents I. Introduction II. History of Bioremediation 1. ‘Courtship’ Period (Pre-1989) 2. ‘Honeymoon’ Period (1989-1991) 3. ‘Establishment’ Period (since 1992) III. The Biological and Chemical Processes of Bioremediation 1. Biodegradation a. Biological Process b. Degrading Species c. Chemical Process d. Need for Bioremediation 2. Bioremediation a. Seeding with Microbial Cultures b. Environmental Modification IV. Recent Applications of Bioremediation Techniques and their Effectiveness 1. Amoco Cadiz 2. Exxon Valdez 3. Mega Borg 4. Apex Barges 5. Arabian Gulf War V. Conclusion Bibliography Bioremediation Methods for Oil Spills Abstract. The increasing number of marine oil spills asks for effective solutions for the environment. Bioremediation techniques have become a major mechanism for removing oil residues on the affected shorelines. Among the different techniques to enhance natural biodegradation by indigenous microorganisms, seeding of new bacteria and fertilizing the indigenous populations have attracted the most interest. The application of nutrients as nitrogen and phosphorus in the form of fertilizers have shown to be most effective in accelerating the biodegradation process and at the same time to be environmentally safe. I. Introduction Since the freighter Pallas caused the worst oil pollution of the tidel shallows in the North Sea last November, thousands of sea birds and probably numerous...
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...spill cleanup Techniques: Its applicability Trade – offs and Advantages (summary review paper). Efforts have been made largely to clean up oil spill. These factors include knowing the type of oil, its density, water temperature, volume of the spill, waves, speed etc. Techniques like low tech approaches which involves containment and skimming and burning: and high tech such as varying of sophisticated dispersants e.g. giant separators have been remedies used for oil spill cleanup. Oil spill have destroyed a number of marine and terrestrial wildlife species. A terrestrial animal that depends on seafood dies of hunger due to the destruction of marine food by oil spill. Some marine animal that live and breathe in water dies off because of the contamination of water. The first step to approach when handling oil spill cleanup is quick action. Once we find out there is a spill, speed and accuracy is important for cleanup process. Locating the source of oil spill, its size and thickness etc should follow. According to Larry Nies speed and accuracy can be achieved by using a method known as visual observation from the air, with still and photographing. This method is the cheapest but not the best, it has limitations like inability to see well due to atmospheric and sea conditions etc. A better method but expensive one is the use of airborne sensors. There are some short comes involved in detecting marine environment oil spill like the thickness of sensors etc. Ways involved in recovery...
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...Bioremediation Contents I. Introduction II. History of Bioremediation 1. ‘Courtship’ Period (Pre-1989) 2. ‘Honeymoon’ Period (1989-1991) 3. ‘Establishment’ Period (since 1992) III. The Biological and Chemical Processes of Bioremediation 1. Biodegradation a. Biological Process b. Degrading Species c. Chemical Process d. Need for Bioremediation 2. Bioremediation a. Seeding with Microbial Cultures b. Environmental Modification IV. Recent Applications of Bioremediation Techniques and their Effectiveness 1. Amoco Cadiz 2. Exxon Valdez 3. Mega Borg 4. Apex Barges 5. Arabian Gulf War V. Conclusion Bibliography Bioremediation Methods for Oil Spills Abstract. The increasing number of marine oil spills asks for effective solutions for the environment. Bioremediation techniques have become a major mechanism for removing oil residues on the affected shorelines. Among the different techniques to enhance natural biodegradation by indigenous microorganisms, seeding of new bacteria and fertilizing the indigenous populations have attracted the most interest. The application of nutrients as nitrogen and phosphorus in the form of fertilizers have shown to be most effective in accelerating the biodegradation process and at the same time to be environmentally safe. I. Introduction Since the freighter Pallas caused the worst oil pollution of the tidel shallows in the North Sea last November, thousands of sea birds and probably numerous...
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...1. The coliform index is a rating of the purity of water based on a count of fecal bacteria. www.merriam-webster.com/dictionary/coliform%20index 2. enterococci are also measured because they have higher survival in salt water than coliforms and because they are thought to be more tightly associated with pathogens harmful to humans (Wymer et al. 2005) http://www.eopugetsound.org/science-review/section-6-marine-fecal-bacteria 3. Multiple Tube Techniques utilize selective and differential liquid media into which multiple aliquots of serial dilutions are inoculated. The multiple tube techniques yield the statistically derived Most Probable Numbers of organisms per aliquot (usually 100 ml) of water. http://www2.fiu.edu/~psharp01/Exp9WaterBact.pdf Plate count[edit] The plate count method relies on bacteria growing a colony on a nutrient medium so that the colony becomes visible to the naked eye and the number of colonies on a plate can be counted. To be effective, the dilution of the original sample must be arranged so that on average between 30 and 300 colonies of the target bacterium are grown. http://en.wikipedia.org/wiki/Bacteriological_water_analysis Pour plates[edit] When the analysis is looking for bacterial species that grow poorly in air, the initial analysis is done by mixing serial dilutions of the sample in liquid nutrient agar which is then poured into bottles which are then sealed and laid on their sides to produce a sloping agar surface. The total number...
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...Diversity I: How Plants Colonized Land Review Questions Part I 1. The most recent common ancestor of all land plants was probably similar to modern-day members of which group? Charophytes. 2. The structural integrity of bacteria is to peptidoglycan as the structural integrity of plant spores is to sporopollenin. 3. Which kind of plant tissue should lack phragmoplasts? Tissues performing nuclear division without intervening cytokineses. 4. The following are common to both charophytes and land plants except lignin. 5. A number of characteristics are very similar between charophytes and members of the kingdom Plantae. Of the following, which characteristic does not provide evidence for a close evolutionary relationship between these two groups? Alternation of generations. 6. A researcher wants to develop a test that will distinguish charophytes and land plants from green algae. Which of the following chemicals would be the best subject for such an assay? Glycolate oxidasean peroxisomal enzyme that is associated with photorespiration. 7. In animal cells and in the meristem cells of land plants, the nuclear envelope disintegrates during mitosis. This disintegration does not occur in the cells of most protists and fungi. According to our current knowledge of plant evolution, which group of organisms should feature mitosis most similar to that of land plants? Charophytes. 8. On a field trip, a student in a marine biology class collects an organism that...
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...Biological classification Biological classification is the arrangement of organisms into categories that express their PHYLOGENY, or line of descent, based on information such as structure, development, biochemical or physiological functions, and evolutionary history of organisms. The purpose of such a classification is to provide a clear and practical way to organize and communicate information about organisms. Classification can show relationships between different ancient and modern groups, indicate the evolutionary pathways along which present-day organisms may have developed, and provide a basis for comparing experimental data about different plant and animal groups. Organisms included in a group share a common genetic heritage in their DNA, and they must be more closely related to each other than they are to the members of other groups of the same rank. However, classifications of organisms are modified as ideas of their phylogeny change. Taxonomy is the theory and practice of classifying organisms. It is a branch of systematics, the study of the diversity of organisms. The first scheme for classifying animals into logical groupings may have been proposed by Aristotle more than 2,000 years ago. Since that time, many new classification systems have been proposed; none, however, has succeeded in fitting all plants, animals, and microorganisms into a single, completely satisfactory scheme. For example, some taxonomists classify algae with the protista or consider them plants...
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...Arthropoda Superphylum Platyzoa Platyhelminthes Gastrotricha Rotifera Acanthocephala Gnathostomulida Micrognathozoa Cycliophora Superphylum Lophotrochozoa Sipuncula Hyolitha † Nemertea Phoronida Bryozoa Entoprocta Brachiopoda Mollusca Annelida Synonyms Metazoa Haeckel, 1874 Animals are multicellular, eukaryotic organisms of the kingdom Animalia (also called Metazoa). Their body plan eventually becomes fixed as they develop, although some undergo a process of metamorphosis later on in their lives. Most animals are motile, meaning they can move spontaneously and independently. All animals must ingest other organisms or their products for sustenance (see Heterotroph). Most known animal phyla appeared in the fossil record as marine species during the Cambrian explosion, about 542 million years ago. Animals are divided into various sub-groups, some of which are: vertebrates (birds, mammals, amphibians, reptiles, fish); molluscs (clams, oysters, octopuses, squid, snails); arthropods (millipedes, centipedes, insects, spiders,...
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...habitat (National Wildlife Federation, 2012). Animals The Everglades is home to numerous species of animals including those native to the lands, threatened, and considered endangered. Wildlife populaces include over 350 bird species including the Great Blue heron, great egret, and wood stork. Land dwellers that inhibit the Everglades include Alligator and crocodile reptiles, Florida panther, Burmese python, West-Indian Manatee, sea turtles, and raccoon just to name a few. The Everglades most endangered animal is the Florida panther, of which approximately only 80 now survive (National Wildlife Federation, 2012). Organisms in the Everglades Producers Consumers Decomposers Monocotyledons Manatee Bacteria Saw grass Alligator Gar Fungi Pond apple tree...
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...* Chapter 25 * Evolution has to work with existing forms * Heterochrony Evolutionary change in rate or timing of developmental events * Padomorphosis Mature state of an organism retains juvenile characteristics Spatial Patterns Rearranges structural features through changes in gene expression or gene duplications. Homeotic genes control 3-D patterns of multicellular organisms Hox gene family: HoxC6 expressed (no limbs), HoxC6 not expressed (limbs can form) Jellyfish to humans Exaptation Traits evolved in one context are used for an entirely different function Feathers first thought to be used as insulation. Feathers are an exaptation- evolved in context of insulation, now used for different function (flight) Adaptive Radiation: a single lineage (common ancestor) undergoes rapid speciation and ecological diversification to form multiple new species. Can occur when: Key Adaptation Adaptations that allow a lineage to exploit new habitats( or resources) and diversify rapidly If key adaptations evolve convergently in different groups: compare diversity of group with key adaptation to diversity of sister group lacking key adaptation (paired t-test) After mass extinction event (leaves many vacant niches for organism to diversify and fill Colonization of a new habitat/location Rapid diversification of “picture-winged” Drosophila on Hawaiian Islands Hypothesis of Chemical Evolution Abiotic synthesis of small organic molecules Observed...
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...Chapter I INTRODUCTION Background of the Study One of the major sources of protein in human diet is fish. In fact, marine animals were assumed by ancient writers to be symbols of good health. However, nowadays, marine animals are far from being representatives of good health. They are subjected to diseases just as much as their terrestrial counterparts. Disease, in fishes, is closely linked to environmental stress. In the wild, they generally have some degree of freedom to modify their environment. They can move to more suitable conditions if faced with a negative environmental change such as a reduction in oxygen level. In culture conditions, on the other hand, they have limited opportunity to choose their external environmental conditions. Most individual fish, may it be in wild or cultivated populations are infected with parasites. The number of parasites necessary to cause harm to the fish varies considerably with the species and size of the host and its health status. Many parasite species are host-specific to at least some degree and are capable of infecting one or only a limited number of host species. Parasites disease of fish (and livestock) reduces the amount of food available to people around the globe. This is why many researchers mention that it is imperative to investigate the relationship between the environmental factors which affects the parasites that affect production and quality. Even today, it remains difficult to convince governments and...
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.... . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 5 15 30 39 46 54 68 81 104 147 3. Laboratory Exercises Microscopy . . . . . . Taxonomy and Classification . Cells – The Basic Units of Life . Asexual & Sexual Reproduction Development & Life Cycles . . Ecosystems of Texas . . . . The Bacterial Kingdoms . . . The Protists . . . . . . The Fungi . . . . . . . The Plant Kingdom . . . . The Animal Kingdom . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 12 13 17 22 26 29 . 32 . 42 . 50 . 59 . 89 4. Lab Reports (to be turned in - deadline dates as announced) Taxonomy & Classification . . . . . . Ecosystems of Texas. . . . . . . . . The Bacterial Kingdoms . . . . . . . The Protists . . . . . . . . . . The Fungi . . . . . . . . . . . Leaf Identification Exercise . . . . . . The Plant Kingdom . . . . . . . . Identifying Common Freshwater Invertebrates The Animal Kingdom . . . . . . . Biol 1409: Diversity of Life – Lab Manual, Ziser, 2013.8...
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...proliferatum is a filamentous fungus or mould found in aerobiologic surveys worldwide. It is a major parasite of rice, sugar cane, sorghum, bean, soybean, and is especially common on maize grains (Pitt, et al. 1994). According to (De Leon and Pandey 1989; King and Scott 1981; Ochor et al. 1987), F. proliferatum causes a disease called Fusarium kernel rot. In parts of the USA and lowlands tropics, this is one of the most important ear diseases and is associated with warm, dry years and insect damaged fields. Czembor, et al. (2015) stated that maize is one of the most important crops in Poland. Diseases caused by Fusarium spp. can affect the yield and grain quality of maize because of contamination with numerous mycotoxins produced by these fungi. Similar results were obtained from 148 samples of maize from the Philippines, and 82 samples of maize from Indonesia. F. proliferatum persisted in high numbers in stored maize from the both countries (Pitt, et al.,1993). (Zainudinet al., 2008b; NurIzzati and Salleh, 2009), stated that F. proliferatum have been isolated and found to be associated with bakanae disease in Malaysian rice varieties. Measures were taken to control the disease such as the chlorothalonil which is a commonly used fungicide in rural and urban environments that can be applied through direct overspray and drift from aerial applications especially on those plants that are affected by fungal diseases ( Sherrard et al. 2003). Yet,...
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...Available online at www.sciencedirect.com Biotechnology Advances 26 (2008) 246 – 265 www.elsevier.com/locate/biotechadv Research review paper Biological degradation of plastics: A comprehensive review Aamer Ali Shah ⁎, Fariha Hasan, Abdul Hameed, Safia Ahmed Department of Microbiology, Quaid-i-Azam University, Islamabad, Pakistan Received 22 November 2007; received in revised form 31 December 2007; accepted 31 December 2007 Available online 26 January 2008 Abstract Lack of degradability and the closing of landfill sites as well as growing water and land pollution problems have led to concern about plastics. With the excessive use of plastics and increasing pressure being placed on capacities available for plastic waste disposal, the need for biodegradable plastics and biodegradation of plastic wastes has assumed increasing importance in the last few years. Awareness of the waste problem and its impact on the environment has awakened new interest in the area of degradable polymers. The interest in environmental issues is growing and there are increasing demands to develop material which do not burden the environment significantly. Biodegradation is necessary for water-soluble or water-immiscible polymers because they eventually enter streams which can neither be recycled nor incinerated. It is important to consider the microbial degradation of natural and synthetic polymers in order to understand what is necessary for biodegradation and the mechanisms involved. This...
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...REVIEW D. Ryan Georgianna1 & Stephen P Mayfield1 . doi:10.1038/nature11479 Exploiting diversity and synthetic biology for the production of algal biofuels Modern life is intimately linked to the availability of fossil fuels, which continue to meet the world’s growing energy needs even though their use drives climate change, exhausts finite reserves and contributes to global political strife. Biofuels made from renewable resources could be a more sustainable alternative, particularly if sourced from organisms, such as algae, that can be farmed without using valuable arable land. Strain development and process engineering are needed to make algal biofuels practical and economically viable. D espite limited supply and increasing demand, fossil fuels remain among the world’s cheapest commodities. Prices will inevitably rise once demand starts to outstrip supply, but short- to medium-term replacement of fossil fuels by renewable and more environmentally benign alternatives will occur only if the substitutes can compete economically. One of these alternatives is based on the oils extracted from algae, and commercial-scale pilot facilities to test these are in operation. However, significant improvements are still needed to make algal biofuels economically viable. In this Review, we outline the advantages of algae as a biofuel producer, discuss the different cultivation methods, consider the options for achieving optimal algal biomass and lipid production, and the process engineering...
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