...Gene Recognition A project report submitted to M S Ramaiah Institute of Technology An Autonomous Institute, Affiliated to Visvesvaraya Technological University, Belgaum in partial fulfillment for the award of the degree of Bachelor of Engineering in Computer Science & Engineering Submitted by Mudra Hegde 1MS07CS052 Nakul G V 1MS07CS053 Under the guidance of Veena G S Assistant Professor Computer Science and Engineering M S Ramaiah Institute of Technology [pic] DEPARTMENT OF COMPUTER SCIENCE & ENGINEERING M.S.RAMAIAH INSTITUTE OF TECHNOLOGY (Autonomous Institute, Affiliated to VTU) BANGALORE-560054 www.msrit.edu May 2011 Gene Recognition A project report submitted to M. S. Ramaiah Institute of Technology An Autonomous Institute, Affiliated to Visvesvaraya Technological University, Belgaum in partial fulfillment for the award of the degree of Bachelor of Engineering in Computer Science & Engineering Submitted by Mudra Hegde 1MS07CS052 Nakul G V 1MS07CS053 Under the guidance of Veena G S Assistant Professor Computer Science and Engineering M S Ramaiah Institute of Technology [pic] DEPARTMENT OF COMPUTER SCIENCE & ENGINEERING M. S. RAMAIAH INSTITUTE OF TECHNOLOGY (Autonomous Institute, Affiliated to VTU) BANGALORE-560054 www.msrit.edu May 2011 Department of Computer Science...
Words: 8197 - Pages: 33
...* DNA technology – Methods for studying and manipulating genetic material, has rapidly revolutionized the field of forensics, the scientific analysis of evidence for legal investigators * Has practical applications beyond its use in forensic science * Include the use of gene cloning in the production of medical and industrial products, the development of genetically modified organisms for agriculture, and even the investigation of genealogical questions * DNA evidence was used to solve a double murder in England * Showed that two murders could have been committed by the same person * Showed the innocence of someone who confessed to one of the murders * Showed the absence of a match in 5,000 men tested when the murderer persuaded another man to donate blood in his name * Showed a match with the murder and DNA found with both victims * Biotechnology: The manipulation of organisms or their components to make useful products * Grew out of discoveries made about 60 years ago by American geneticists Joshua Lederberg and Edward Tatum * Performed a series of experiments with E.coli that demonstrated that two individual bacteria can combine genes * Genetic engineering involves manipulating genes for practical purposes * Gene cloning leads to the production of multiple identical copies of a gene-carrying piece of DNA * Recombinant DNA is formed by joining DNA sequences from two different sources ...
Words: 3278 - Pages: 14
...This mutual ancestor that humans share with other organisms including rice that lived about 1.6 billion years ago. Chimpanzees and bonobos are our closet living relative. Researchers were able to come to this conclusion by comparing the genomes of chimpanzees and bonobos to the genome of humans. In this paper I will discuss why all organisms are related to each other, including humans. I will do this by using natural selection as a mechanism for evolution. Natural selection as a mechanism for evolution explains how organisms have changed over time to adapt to their environment. I will also provide the percent of relatedness in terms of nucleotide sequence. I will also discuss the Human genome project and its importance. The benefits of the human genome project extend far beyond determining who our closest ancestor is and how closely humans are related to mice and other organisms. In this paper I will also look at the technology that has been developed to enhance the findings the Human Genome Project. Humans Are Related To Other Organisms Humans share about 99% of our DNA with chimpanzees and bonobos. DNA (deoxyribonucleic acids) is the molecule that makes up an organism’s genome. DNA is located in the nucleus of eukaryotic cells and is found in the nucleoid of prokaryotic cells. DNA consist of genes which are instructions to make molecules called proteins. DNA’s serves a significant purpose to any organism it holds the instructions that is required for an...
Words: 1371 - Pages: 6
...D38–D51 Nucleic Acids Research, 2011, Vol. 39, Database issue doi:10.1093/nar/gkq1172 Published online 20 November 2010 Database resources of the National Center for Biotechnology Information Eric W. Sayers1,*, Tanya Barrett1, Dennis A. Benson1, Evan Bolton1, Stephen H. Bryant1, Kathi Canese1, Vyacheslav Chetvernin1, Deanna M. Church1, Michael DiCuccio1, Scott Federhen1, Michael Feolo1, Ian M. Fingerman1, Lewis Y. Geer1, Wolfgang Helmberg2, Yuri Kapustin1, David Landsman1, David J. Lipman1, Zhiyong Lu1, Thomas L. Madden1, Tom Madej1, Donna R. Maglott1, Aron Marchler-Bauer1, Vadim Miller1, Ilene Mizrachi1, James Ostell1, Anna Panchenko1, Lon Phan1, Kim D. Pruitt1, Gregory D. Schuler1, Edwin Sequeira1, Stephen T. Sherry1, Martin Shumway1, Karl Sirotkin1, Douglas Slotta1, Alexandre Souvorov1, Grigory Starchenko1, Tatiana A. Tatusova1, Lukas Wagner1, Yanli Wang1, W. John Wilbur1, Eugene Yaschenko1 and Jian Ye1 1 Downloaded from http://nar.oxfordjournals.org/ by guest on March 20, 2015 National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Building 38A, 8600 Rockville Pike, Bethesda, MD 20894, USA and 2University Clinic of Blood Group Serology and Transfusion Medicine, Medical University of Graz, Auenbruggerplatz 3, A-8036 Graz, Austria Received September 16, 2010; Revised October 29, 2010; Accepted November 1, 2010 ABSTRACT In addition to maintaining the GenBank nucleic acid sequence database, the National Center for Biotechnology...
Words: 11985 - Pages: 48
...accurate nuclear protein prediction using n-mer statistics with various classification algorithms Md. Saiful Islam, Alaol Kabir, Kazi Sakib, and Md. Alamgir Hossain Abstract Prediction of nuclear proteins is one of the major challenges in genome annotation. A method, NcPred is described, for predicting nuclear proteins with higher accuracy exploiting n-mer statistics with different classification algorithms namely Alternating Decision (AD) Tree, Best First (BF) Tree, Random Tree and Adaptive (Ada) Boost. On BaCello dataset [1], NcPred improves about 20% accuracy with Random Tree and about 10% sensitivity with Ada Boost for Animal proteins compared to existing techniques. It also increases the accuracy of Fungal protein prediction by 20% and recall by 4% with AD Tree. In case of Human protein, the accuracy is improved by about 25% and sensitivity about 10% with BF Tree. Performance analysis of NcPred clearly demonstrates its suitability over the contemporary in-silico nuclear protein classification research. 1 Introduction Nucleus, popularly known as the control center of a cell, is the central unit of eukaryotic cells [2]. Unlike other organelles, its function is regulated by two genomes due to the presence of an explicit nuclear genome. It performs a plethora of biochemical reactions like oxidative phosphorylation, Krebs cycle, DNA replication, transcription, translation, etc. In addition nuclei are also involved in apoptosis and ionic homeostasis [3]. Because of their multidimensional...
Words: 3249 - Pages: 13
...Microbiology Mid Term Review What contribution did these dudes make to science and what type of experiments were involved in the discoveries they made? Louis Pasteur- Heat pasteurization- 1st vaccine for rabies. Found alcohol only produced in wine if yeast was present. “Swan necked” flasks experiment for spontaneous generation. Robert Koch- Studied anthrax, Koch’s postulates (germ theory) studied and awarded for TB research. Anton van Leewenhoek- Made the 1st lens to observe living microorganisms. The lens magnified up to 300x and were free of distortion. Edward Jenner- Studied small pox. Came up with the first vaccine for smallpox. Alexander Fleming- Discovered lysozyme (an enzyme) was found in tears, saliva, and sweat could kill bacteria. What issues and types of instruments are involved in visualizing bacteria and viruses with a compound light microscope? Reflection- transmission-absorption with florescence-refraction. Condenser-is a lens that serves to concentrate light from the illumination source that is in turn focused through the object and magnified by the objective lens. iris diaphragm-regulates the amount of light on the specimen. objective lenses- magnifies ranges from 10x to 40x, ocular lenses. stage- supports the slide for viewing. focusing knobs-moves the stage up and down for focusing. total magnification- take the power of the objective (4X, 10X, 40x) and multiply by the power of the eyepiece, usually 10X. What are the differences...
Words: 3231 - Pages: 13
...REVIEW D. Ryan Georgianna1 & Stephen P Mayfield1 . doi:10.1038/nature11479 Exploiting diversity and synthetic biology for the production of algal biofuels Modern life is intimately linked to the availability of fossil fuels, which continue to meet the world’s growing energy needs even though their use drives climate change, exhausts finite reserves and contributes to global political strife. Biofuels made from renewable resources could be a more sustainable alternative, particularly if sourced from organisms, such as algae, that can be farmed without using valuable arable land. Strain development and process engineering are needed to make algal biofuels practical and economically viable. D espite limited supply and increasing demand, fossil fuels remain among the world’s cheapest commodities. Prices will inevitably rise once demand starts to outstrip supply, but short- to medium-term replacement of fossil fuels by renewable and more environmentally benign alternatives will occur only if the substitutes can compete economically. One of these alternatives is based on the oils extracted from algae, and commercial-scale pilot facilities to test these are in operation. However, significant improvements are still needed to make algal biofuels economically viable. In this Review, we outline the advantages of algae as a biofuel producer, discuss the different cultivation methods, consider the options for achieving optimal algal biomass and lipid production, and the process engineering...
Words: 8347 - Pages: 34
...Open Access: Full open access to this and thousands of other papers at http://www.la-press.com. Evolutionary Bioinformatics Computational Identification of MicroRNAs from the Expressed Sequence Tags of Toxic Dinoflagellate Alexandrium Tamarense Dahai Gao1, limei Qiu1, Zhanhui Hou1, Qingchun Zhang2, Jianmin Wu3, Qiang Gao1 and linsheng song1 1 Key Laboratory of Experimental Marine Biology, Institute of Oceanology, Chinese Academy of Sciences (IOCAS), Qingdao, People’s Republic of China. 2Key Laboratory of Marine Ecology and Environmental Sciences, Institute of Oceanology, Chinese Academy of Sciences (IOCAS), Qingdao, People’s Republic of China. 3Institute of Genomic Medicine, Wenzhou Medical University, Wenzhou, Zhejiang, People’s Republic of China. AbstrAct: Micro ribonucleic acids (miRNAs) represent a class of small noncoding RNAs that play important roles in multiple biological processes by degrading targeted mRNAs or by repressing mRNA translation. In the case of algal lineages, especially dinoflagellates, knowledge regarding the miRNA system is still limited and its regulatory role remains unclear. In the present study, a computational approach was employed to screen miRNAs from the expressed sequence tags (ESTs) of Alexandrium tamarense. A total of 18 potential miRNAs were identified according to a range of filtering criteria. In addition, unique evolutionary features, such as miRNA gene duplication and sequence similarity to metazoan miRNAs, implied that the...
Words: 5014 - Pages: 21
...Role in Forensics Science At a crime scene there may be a lot DNA evidence left behind or none. DNA can identify victims and suspects. It can help solve cold case and give new leads to other cases. DNA is also use to determine kinship in a missing person case. It can also help exonerate someone from a crime that they were convicted of. When handling DNA such as blood at a crime scene it is important that it is properly documented, photographed, collected and stored. Besides blood, DNA can include: body fluid, hair and skin. Such DNA can be matched to an individual. DNA is the acronym for Deoxyribonucleic acid. According to Campbell Essential Biology with Physiology, “The word nucleic is referring to “DNA location in the nuclei of eukaryotic cell.” (Page49). “DNA is genetic material that humans and other organisms inherit from their parents which consists of gain molecules” (Page 48). The shape of DNA is a double helix. Some would say it looks like a twisted ladder. “The double helix has four bases; (A) Adenine, (C) Cytosine, (G) Guanine and (T) Tyhmine. The bases have to be properly linked to their pair or else there will be a mutation in the gene. The following are the base pairs that bind:”Adenine with Tyhmine and Cystosine with Guanine” (Page 49). DNA testing began in the mid 1980’s. In the online article, DNA Factors states: Ever since the start of DNA testing in 1985, biological material has been a reliable physical evidence to help solve crimes (Williams). DNA plays...
Words: 2568 - Pages: 11
...Biology guide First assessment 2016 Biology guide First assessment 2016 Diploma Programme Biology guide Published February 2014 Published on behalf of the International Baccalaureate Organization, a not-for-profit educational foundation of 15 Route des Morillons, 1218 Le Grand-Saconnex, Geneva, Switzerland by the International Baccalaureate Organization (UK) Ltd Peterson House, Malthouse Avenue, Cardiff Gate Cardiff, Wales CF23 8GL United Kingdom Website: www.ibo.org © International Baccalaureate Organization 2014 The International Baccalaureate Organization (known as the IB) offers four high-quality and challenging educational programmes for a worldwide community of schools, aiming to create a better, more peaceful world. This publication is one of a range of materials produced to support these programmes. The IB may use a variety of sources in its work and checks information to verify accuracy and authenticity, particularly when using community-based knowledge sources such as Wikipedia. The IB respects the principles of intellectual property and makes strenuous efforts to identify and obtain permission before publication from rights holders of all copyright material used. The IB is grateful for permissions received for material used in this publication and will be pleased to correct any errors or omissions at the earliest opportunity. All rights reserved. No part of this publication may be reproduced, stored in a retrieval system, or transmitted...
Words: 43724 - Pages: 175
...Section A: Basic Microbiology 1 SCOPE AND HISTORICAL DEVELOPMENTS IN MICROBIOLOGY “Science contributes to our culture in many ways, as a creative intellectual activity in its own right, as a light which has served to illuminate man’s place in the uni-verse, and as the source of understanding of man’s own nature” —John F. Kennedy (1917–63) The President of America The bacterium Escherichia coli INTRODUCTION AND SCOPE MICROBIOLOGY is a specialized area of biology (Gr. bios-life+ logos-to study) that concerns with the study of microbes ordinarily too small to be seen without magnification. Microorganisms are microscopic (Gr. mikros-small+ scopein-to see) and independently living cells that, like humans, live in communities. Microorganisms include a large and diverse group of microscopic organisms that exist as single cell or cell clusters (e.g., bacteria, archaea, fungi, algae, protozoa and helminths) and the viruses, which are microscopic but not cellular. While bacteria and archaea are classed as prokaryotes (Gr. pro-before+ karyon-nucleus) the fungi, algae, protozoa and helminths are eukaryotes (Gr. eu-true or good+ karyon-nucleus). Microorganisms are present everywhere on earth, which includes humans, animals, plants and other living creatures, soil,water and atmosphere. Microorganisms are relevant to all of our lives in a multitude of ways. Sometimes, the influence of microorganisms on human life is beneficial, whereas at other times, it is detrimental. For example...
Words: 9515 - Pages: 39
...Unit II: Genetics Brief Overview Reading: Chapters 3, 4, 9-12, 14 (Note: you have reviewed much of this already) The earth is teeming with living things. We can easily see some of the larger organisms—trees, grass, flowers, weeds, cats, fish, squirrels, dogs, insects, spiders, snails, mushrooms, lichens. Other organisms are everywhere, in the air, in water, soil and on our skin, but are too small to see with the naked eye—bacteria, viruses, protists (single celled eukaryotes such as amoebae), and tiny plants and animals. Life is remarkable in its complexity and diversity, and yet it all boils down to a very simple idea—the instructions for making all this life are written in nucleic acids, usually DNA. Most organisms have a set of DNA that contains the instructions for making that creature. This DNA contains four “letters” in which these instructions are written—A, T, G, and C. The only difference between the code for a dog and the code for a geranium is in the order of those letters in the code. If you took the DNA from a human and rearranged the letters in the right way, you could produce an oak tree—arrange them slightly differently and you would have a bumble bee—arrange them again and you would have the instructions for making a bacterium. Acting through more than two billion years, the process of evolution has taken one basic idea—a molecular code that uses four letters—and used it over and over, in millions of combinations to produce a dazzling array of life forms...
Words: 32016 - Pages: 129
.............................. 1 2.2 Employment ............................................................................................................................................ 2 2.3 Administration ....................................................................................................................................... 2 3.1 Changes Introduced in GATE 2013 that will continue to remain in force for GATE 2014 .......................................................................................................................................................... 3 4.1 Eligibility for GATE 2014 ................................................................................................................... 4 4.2 GATE Papers ............................................................................................................................................ 5 4.3 Zone-Wise List of Cities in which GATE 2014 will be Held ................................................... 6 4.4 Zone-Wise List of Cities for 3rd Choice .......................................................................................... 7 4.4 State-wise Examination Cities .......................................................................................................... 7 4.4 How to Apply .............................................................................................................................................
Words: 32784 - Pages: 132
...CARIBBEAN EXAMINATIONS COUNCIL Caribbean Advanced Proficiency Examination CAPE ® BIOLOGY SYLLABUS Effective for examinations from May/June 2008 CXC A10/U2/07 Published by the Caribbean Examinations Council All rights reserved. No part of this publication may be reproduced, stored in a retrieval system, or transmitted in any form, or by any means electronic, photocopying, recording or otherwise without prior permission of the author or publisher. Correspondence related to the syllabus should be addressed to: The Pro-Registrar Caribbean Examinations Council Caenwood Centre 37 Arnold Road, Kingston 5, Jamaica, W.I. Telephone: (876) 630-5200 Facsimile Number: (876) 967-4972 E-mail address: cxcwzo@cxc.org Website: www.cxc.org Copyright © 2007, by Caribbean Examinations Council The Garrison, St Michael BB14038, Barbados CXC A10/U2/07 ii Contents RATIONALE.....................................................................................................................................................1 AIMS ..................................................................................................................................................................1 SKILLS AND ABILITIES TO BE ASSESSED ...............................................................................................2 PRE-REQUISITES OF THE SYLLABUS .......................................................................................................5 STRUCTURE...
Words: 11239 - Pages: 45
...Course code: 15MA101 | Engineering Mathematics | L | T | P | C | | | 3 | 1 | - | 4 | Course Objectives | To train the students in basic mathematics essential for modeling and solving engineering problems. | Course Outcomes | 1. An ability to apply knowledge of mathematics, science and engineering. 2. An ability to identify, formulate and solve engineering problems | Differential Calculus: Review: Functions and graphs, Limits and Continuity, Differentiation, Maxima and minima of a function, Rolle’s Theorem, Mean Value Theorem. Indeterminate forms and L'Hopital's rule, Infinite sequences and series, Power series, Taylor's and Maclaurin's series, Convergence of Taylor's series, Error Estimates, Polar coordinates and Polar equations. Functions of two or more real variables, Partial derivatives of second and higher order, Euler’s theorem on homogenous function, Total derivatives, Differentiation of composite and implicit functions, Change of variable, Jacobians, Maxima and minima of functions of two or more variable, Lagrange’s method of undetermined multipliers. Integral Calculus: Estimating with finite sums and limits of finite sums, Definite integral, The fundamental theorem of calculus, Trigonometric substitutions, Integration by reduction formula for powers of some trigonometric functions, Improper integrals, Beta and Gamma integrals. Double integrals, Triple...
Words: 6651 - Pages: 27