... Mitochondrial DNA Analysis Brandon Sanders UMUC BIOL 320 6380 Forensic Biology New Methods and Applications in Mitochondrial DNA Analysis Mitochondria are structures within cells that function as energy mediators. Each cell contains hundreds to thousands of mitochondria. We know from this class that DNA is bundled in chromosomes inside the nucleus, but mitochondria also include a very small amount of their own DNA. This genetic material is known as mitochondrial DNA or mtDNA. The use of mitochondrial DNA (mtDNA) sequence analysis to identify biological evidence has been well documented. More than 50 laboratories worldwide are now applying mtDNA analysis in forensic casework; e.g., to help identify human remains or to help discover the source of a shed hair. In addition, the number of mtDNA sequences added to population databases has grown rapidly. Estimates find that there are greater than 5000 sequences which have been generated in forensic laboratories, and that an equal number will be generated in the next year or two. As a result, more is known about the genetics of mtDNA, as well as the power of the system as a forensic marker. Therefore, the analysis of mtDNA is in a strong position as we approach the next millennium. Using Mitochondrial DNA as a means for human identification has quite a few features. The mitochondrial genome has numerous...
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...CURRICULUM VITAE CHUAN-CHAO WANG Place of Birth: Liaocheng, Shandong, China; Date of Birth: 1th August, 1987 Nationality: Chinese Email: Chuan-Chao_Wang@hms.harvard.edu, wang@shh.mpg.de Research experience 2015~now: Research Fellow at Department of Genetics, Harvard Medical School, US; Postdoc at Max Planck Institute for the Science of Human History, Germany. Research Interests Using population genetics, genomics, ancient DNA and computational biology approaches to study genetic structure, origin and migrations, complex diseases and anthropological traits in human populations. Education 2006-2010 2010-2015 BSc in Marine Biology, Ocean University of China PhD in Human Biology, Fudan University, China Intern 2011.7-2011.9 Intern at Human Genome Sequencing Center, Baylor College of Medicine, USA Grants Awarded 2011 Innovation Grant for Excellent Graduate Student (Fudan University), No. EZH1322301. Proposal: Discovery of phylogenetic relevant Y-chromosome variants using targeting sequencing. 2012 Academic Youth Science Grant (Ministry of Education, China), No. JFH1322006. Proposal: Y chromosomal substitution rate estimation in deep-rooting pedigrees. Grants Participated Genographic Project, funded by IBM National Excellent Youth Science Foundation of China (31222030) National Natural Science Foundation of China (31071098, 91131002) Shanghai Rising-Star Program (12QA1400300) Shanghai Commission of Education Research Innovation Key Project (11zz04) ...
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...The Origin of Native American Man: A Look at Possible Migrations of Pre-Historic Man Into North America Ally Crawford ARC 330 Dr. Ortmann Spring 2011 Abstract The origins of Native American people have been a topic of debate in academia for decades. There have been several theories, up to and including the possibility that Native Americans arrived via alien intervention. The origins of Native Americans are much less fantastic. Native Americans are descended from ancient Eastern Asians, who crossed into the New World sometime before 14,000 BC. Until recently, archaeology could only speculate on this notion. Recent research in the field of molecular biology is proving this theory has merit. Mitochondrial DNA is showing the same markers in Native American populations as in the Asian populations. Other avenues of research have also lead to the discovery that there are similarities in the X and Y-Chromosomes of the two populations. There are many archaeological and anthropological mysteries surrounding the Americas. Perhaps one of the most perplexing and pervasive is the origin of the Native American peoples. There has been little archaeological data found that can substantiate a human or proto-human presence in the Americas before approximately 14,000 BC. If this is the case, the question becomes from where did the Native American population derive? There have been many hypotheses, ranging from the mundane to the bizarre. A popular conspiracy theory states...
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...Mitochondrial myopathies are a group of diseases and not just one particular disease. However, all these diseases affect only one thing in our body. This one thing is the mitochondria. Those who have studied human genetics or similar sciences, know that mitochondria are present in all our nerve cells and deal with the functions our muscles. These mitochondria are what provide energy to our cells which in turn help in movement of muscles et al. If these mitochondrial problems affect only the muscles, the disease is known as a mitochondrial myopathy, where myo stands for muscle and pathos stands for disease. On the other hand, if they affect both, the muscle and the brain, it is called as a mitochondrial encephalomyopathy, where encephalo stands for brain. Group of Mitochondrial Myopathy Diseases include: Kearns-Sayre syndrome (KSS), Mitochondrial DNA Depletion Syndrome (MDS), Mitochondrial Encephalomyopathy; Lactic Acidosis and Stroke Like Episodes (MELAS), Mitochondrial Neurogastrointestinal Encephalomyopathy (MNGIE), Myoclonus Epilepsy with Ragged Red Fibers (MERRF), Progressive External Ophthalmoplegia (PEO), Neuropathy, Ataxia and Retinitis Pigmentosa (NARP), Leigh Syndrome, and Pearson Syndrome. Now, the question what causes mitochondrial myopathy? All of know that our body is made with the help of genes. The particular type of genes that affect mitochondrial diseases are those that make proteins, which in turn, work inside the mitochondria. Mitochondria refers to a...
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...Nayar of India Sandelle Studway ANT 101 Jeffrey Ratcliffe 06/04/2012 Nayar of India The Nayars of India are an upper caste group mainly residing in the Indian state Kerala. Their culture has held a wide interest of many with their unique practices in marriage and family life. Women are held with the highest respect and they live in a matrilineal family. As an Agrarian state the Nayars are rulers, land owners and warriors. This essay will discuss the life and customs of the Nayar culture. By the end of this essay you will have a great outlook on their kinship, gender relations, believes, and values. Nayars belong to the southwest coast of India which is the state of Kerala. The language spoken is Malayalam belonging to the southern brand of the Dravidian Family. The Nayars are a part of an upper caste system that consists of land owners and rulers. Their land allowed the cultivation of leafy root vegetables, eggs, fish, poultry, goad meat, beef, and water buffalo meat. Most Nayars were vegetarian. Before the British conquest in 1792, the Nayar caste supplied Kerala’s royalty and nobility, militia, and land managers. During British rule, Nayar became more involved in politics, medicine, education, and law. (Encyclopedia Britannica, 1994-2009). Nayar household consisted of matrilineal related Kin where male and female descended from a common female ancestor. In the article “The Nayar Taravad”, C.J fuller discusses M.A Moore argument “A taravad is not a 'matrilineage';...
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...Forensic Hair Analysis Forensic hair analysis is a method of studying hair found at the scene of a crime, and the scientific study of hair is referred to Trichology. In this paper I will discuss the different techniques that are used to study hair during an investigation and the many different aspects of the hair to consider based on what type of investigation is taking place. Hair analysis can be used to determine the presence of a suspect at the scene or to detect the presence of certain chemical substances in the victim or suspect. With the help of DNA techniques used in forensic hair analysis an absolute match can be determined by examining hair found at the scene of a crime. According to Douglas Deedrick of the FBI’s Trace Evidence Unit, Humans shed an average of 100 hairs daily and are often used in violent crime investigations such as: homicides, assaults, burglaries, and armed robberies. (Deedrick, 2000) The most useful hairs in a crime scene investigation are longer hairs found on the scalp but can be subject to changes due to hair colorings or a simple haircut. In order to prevent this outside exposure samples should be taken from potential suspects as soon as possible after the crime to avoid any possible contamination. According to Deedrick, examining a hair under a microscope can help to determine many things about the source of the hair and even how the hair was lost either through shedding or by force, or from which location on the body the hair originated...
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...Genuine accessories from Mercedes-Benz Navigation CDs & DVDs Overview passenger cars c Valid from 01.11.11 to 30.11.11 AUDIO 30 APS AUDIO 50 APS AUDIO 50 APS AUDIO 50 APS AUDIO 50 APS AUDIO 50 APS COMAND APS COMAND APS COMAND APS COMAND APS COMAND APS COMAND APS Universal Media Interface Navigation 20 COMAND APS DX COMAND C COMAND APS The Mercedes-Benz colour codes The Mercedes-Benz colour codes make it easy to find the right CD/DVD for your navigation system. 1. Find your car in the overview. 2. In the columns that matches your navigation system you will find one or more codes consisting of a letter/number combination. 3. Go to the list of codes at the end of the overview to find out which navigation CDs/ DVDs are available for your car and navigation system. Compatibility navigation units & software (Passenger cars) Navigation 20/ Universal Media Interface Audio 30 APS Audio 50 APS Valid from 01.11.2011 to 30.11.2011 COMAND APS COMAND APS DX COMAND - Version C, APS 1, APS 2, APS 4 W/V 168 - A-Class up to 2004 A1 A2 A3 W/C 169 - A-Class from 2004 C1 D1 D2 D3 D4 W/C169 - A-Class from 07/08 M1 L1 L4 L2 L5 L3 W 245 - B-Class C1 D1 D2 D3 D4 W254 - B-Class from 07/08 M1 L1 L4 L2 L5 L3 W/S 202 - C-Class up to 2001 A1 A2 A3 W/S/CL 203 - C-Class up to 03/04 A1 A2 A3 F1 F2 F4 F5 F7 F8 F10 F3 F6 F9 W/S/CL 203 - C-Class from 04/04 C1 D1 D2 D3 D4 W/S204 - C-Class from 03/07 ...
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...void bigNum::Mult(bigNum b){ int l1 = strlen(); int l2 = b.strlen(); char num[101]; // int l3 = strlen(c); bigNum c(num); int l3 = c.strlen(); int r=0; int mult = 0; char ch; char sum; // for(int i=0; i<l1; i++) a[i] -= 48; // for(int i=0; i<l2; i++) b.a[i] -= 48; for(int i=0; i<l1/2; i++) { swap(a[i], a[l1-i-1]); } for(int i=0; i<l2/2; i++) { swap(b.a[i], b.a[l2-i-1]); } // l = l1 > l2 ? l1 : l2; // for(int i=l1; i<=l; i++) a[i] = 0; // for(int i=l2; i<=l; i++) b.a[i] = 0; for(int i=0; i<l1; i++) { r = 0; for (int k=0; k<i; k++){ c.a[k] = '0'; } for (int j=0; j<l2; j++){ mult = ((a[i]-48) * (b.a[i]-48)); ch = ( (mult + r) % 10)+48; for (int t=0; t<i; t++){ if (c.a[t] == '0'){ c.a[t] = ch; break; } } r = (mult + r)/10; } if (r != 0){ ch = r + 48; for (int t=0; t<i; t++){ if (c.a[t] == '0'){ c.a[t] = ch; break; } } } for(int j=0; j<l3/2; j++) { swap(c.a[j], c.a[l3-j-1]); } sum = a.Add(c); } return sum; } /* for (int i=0; i<l3; i++){ cout << c.a[i]-48; } */...
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...Box Portfolio The purpose of this portfolio was to use my knowledge of understanding how to solve a problem using dimensions to find the maximum volume of a box. The problem I had to solve was to take a 11x17 ½ piece of paper and turn it into a box. In order to do this, a square needs to be cut out of each corner. I had to figure out how big of a square needed to be cut out in order to create a box with the maximum volume possible. I did this by narrowing down the possibilities of the dimensions to the nearest ten thousands. (See tables attached) In order to find the maximum volume possible, I made tables using the graphing calculator. In the first column of the first table (L1), I put the size of the square that would be cut out from each corner. In L1, I started with a 1 inch square and went up to a 5.5 inch square. In the second column of the first table (L2), I put the width of the piece of paper subtracting 2 (1 for each corner) and multiplied it by L1 (11-2*L1). In the third column of the first table (L3), I did the same thing as I did in L2 using the length of the paper instead (17.5-2*L1). I used the last column (L4) of the first table to find the volumes (L1*L2*L3). (refer to the tables for widths, lengths and volumes) Using the first table, I was able to narrow down the size of the square to 2 in. Using what I found in table one, I then took the 2 in. square, went down .1 five times and up .1 five times and put that into L1 to try and narrow the size...
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...SUMMARY CBH Ex I CELLS AND ORGANELLES Cell Membrane: consist of a lipid bilayer. Hydrophobic tails are located in the interior. Transmembrane protiens are anchored to the core of the bilayer and can be removed only by detergents that disrupt the bilayer. Peripheral membrane proteins are attatched to the cell surface electrostatically and are easily removed by altering the pH. Eucaryotic cells with outer- and intra- cellular membranes ~ half the cell’s total volume -separate intracellular organelles Nucleus- double membrane-bound organelle containing chromatin. Contains the genetic blueprint for every protein in the body. Nuclear Envelope- separates and mediates transport between the nucleus and the cytoplasm and is supported by intermediate filament proteins, the lamins. Nucleolus- dense non membrane bound structure. rRNA synthesis and ribosome assembly. Ribosome-consists of 2 subunits of ribosomal RNA. Protein synthesis- formation of peptide bonds between amino acids to make polypeptide chains using messenger RNA as a template. Endoplasmic reticulum- (rER) Protein synthesis (sER)is involved in steroid synthesis and detoxification. Golgi apparatus- determines vesicle fate. Finaly assembly and glycosylation of proteins. Mitochondria – double membrane bound energy production mainly in the form of ATP Lysosomes- high acidity, killing of pathogenic organisms, and degradation of waste products. Endosomes- Peroxisomes – production of hydrogen peroxide...
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...athletes were able to maintain exercise intensities from 60 to 80 percent significantly longer during exercise with beet juice supplementation. Trained runners ran 5 percent faster in the later part of a 5000-meter race supplementing with beetroot juice 90 minutes prior to their event. Athletes seem to benefit most from beet juice supplementation 150 minutes prior to their events. Research suggests supplementing with beetroot juice at least six days prior to intense exercise or athletic events for best ergogenic benefits. Active healthy adults supplementing with beet juice for 15 days showed an increase in power and oxygen during sustained exercise. Beetroot juice supplementation is shown to promote mitochondrial biogenesis. Exercise causes cellular stress and mitochondrial biogenesis is a process where our body increases energy in our cells. It is suggested beetroot juice supplementation may improve muscle contraction functions. Beet juice is indicated to improve cardiorespiratory fitness in athletes performing in higher altitudes. Best results were reported when beet juice was supplemented at least six days prior to their events. The timing of beetroot supplementation appears to be a factor for best athletic performance results. Consuming beet juice at least 150 minutes prior to intense exercise is recommended. Caffeine appears to interact with beetroot juice and mask the ergogenic benefit. Peak nitric oxide (NO) blood concentration occurs within 2 to 3 hours after beetroot juice...
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...CB28CH03-Tu ARI 3 May 2012 18:6 E R V I E W A D V A N C E Review in Advance first posted online on May 11, 2012. (Changes may still occur before final publication online and in print.) S I N Driving the Cell Cycle Through Metabolism Ling Cai and Benjamin P. Tu Annu. Rev. Cell Dev. Biol. 2012.28. Downloaded from www.annualreviews.org by Ecole Polytechnique Federal Lausanne on 06/20/12. For personal use only. Department of Biochemistry, University of Texas Southwestern Medical Center, Dallas, Texas 75390-9038; email: benjamin.tu@utsouthwestern.edu Annu. Rev. Cell Dev. Biol. 2012. 28:3.1–3.29 The Annual Review of Cell and Developmental Biology is online at cellbio.annualreviews.org This article’s doi: 10.1146/annurev-cellbio-092910-154010 Copyright c 2012 by Annual Reviews. All rights reserved 1081-0706/12/1110-0001$20.00 Keywords cell growth, cell proliferation, metabolic cycle, growth control, nutrients, yeast Abstract For unicellular organisms, the decision to enter the cell cycle can be viewed most fundamentally as a metabolic problem. A cell must assess its nutritional and metabolic status to ensure it can synthesize sufficient biomass to produce a new daughter cell. The cell must then direct the appropriate metabolic outputs to ensure completion of the division process. Herein, we discuss the changes in metabolism that accompany entry to, and exit from, the cell cycle for the unicellular eukaryote Saccharomyces cerevisiae...
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...Structures, Biosynthesis and Biofunctions of Iron-sulfer proteins Yiming Chen, Brown University, May 11th, 2011 I. Introduction Iron-sulfur proteins are the proteins which contain iron-sulfur clusters, like sulfide-linked di-, tri-, and tetrairon centers with various oxidative states 1. An excess of 120 distinct types of enzymes and proteins are known to contain Fe-S clusters2. Iron-sulfur proteins are known for the role of the oxidation-reduction reactions of mitochondrial electron transportation. They are also discovered in a series of metalloproteins procedures, for example, ferredoxins 3, Coenzyme Qcytochrome c reductase 4, succinate-coenzyme Q reductase 5 and nitrogenase 6. The iron-sulfur proteins have many functions including catalysis, generate radicals, and also can play as sulfur donors in the biosynthesis of lipoic acid and biotin. Additionally some of the Fe-S proteins are able to regulate the gene expression. Furthermore, the discoveries of new iron-sulfur proteins and iron-sulfur clusters has led to lots of interests of their amazing functional and structural diversity, which reflects the versatility of both iron and sulfur in biochemical processes. Since these iron-sulfur proteins are vey common on the metabolic pathways of most organisms, it leads some scientific interests that iron-sulfur compounds had a significant role in the origin of life in the Iron-sulfur world theory 7. Thus theory claims that the early life on earth probaby formed on the...
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...Confirming Pages bye80180_appB_539-654.qxd 11/19/09 9:17 AM Page 539 technology ventures - management dell’imprenditorialità e dell’innovazione Richard C. Dorf, Andrew J. Nelson, Roberto Vona Copyright © 2011 – The McGraw-Hill Companies srl A P P E N D I X B Cases 539 bye80180_appB_539-654.qxd 11/19/09 9:17 AM Page 540 Confirming Pages technology ventures - management dell’imprenditorialità e dell’innovazione Richard C. Dorf, Andrew J. Nelson, Roberto Vona Copyright © 2011 – The McGraw-Hill Companies srl 540 APPENDIX B Cases TREXEL We’ve never met a customer who wasn’t interested in our technology. —David Bernstein, CEO of Trexel David Bernstein hung up the phone with Alex d’Arbeloff, Trexel’s largest investor, and contemplated an upcoming Board of Directors meeting scheduled for June 25, 1998. The meeting was only 10 weeks away and Bernstein, Trexel’s president and chief executive officer, needed to present a coherent vision of the company’s new strategy. Bernstein believed that Trexel’s patented technology for manufacturing foamed plastics had the potential to revolutionize much of the worldwide plastics industry. His innovative process technology, known as MuCell, allowed the Woburn, Massachusetts company to produce foamed plastic utilizing 25% to 50% less material than traditional solid plastics without a significant decrease in the strength of the plastic. Bernstein believed the market for products produced via this...
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